2000—2015年西南区县域土地利用变化特征及驱动力分析——以重庆市奉节县为例

综合分析重庆市奉节县土地利用格局时空演变及其驱动力,为优化西南区县域尺度的土地利用规划、生态大保护和区域可持续发展提供理论参考和数据支持。基于RS和GIS技术,利用四期（2000、2005、2010和2015年）土地利用基础数据,从土地利用动态模型和地学信息图谱等方面出发,揭示区域2000—2015年的土地利用动态变化特征及时空演变规律。依据主成分分析模型和线性回归分析模型,并基于奉节县社会经济统计数据,探究研究区土地利用驱动机制。研究期内,研究区土地空间格局呈现以林地和耕地为主体,同时交错分布其它土地类型的特点。耕地、草地和未利用地土地面积分别减少 78.84 km²、3.73 km²、2.54 km²,而林地、水域和居民工矿用地面积分别增加23.36 km²、46.67 km²、9.03 km²。受三峡移民影响,区域土地利用分布格局由整体无序向局部有序的方向发展。研究期的前10年间,土地利用类型转移主要发生在林地、草地和耕地之间,林地→耕地和草地的面积总和分别为849.38 km²和425.17 km²;2010—2015年间林地和居民工矿用地新增面积分别为9.93 km²和7.09 km²。从产业结构调整、政策影响和社会发展等方面探究区域城镇化的驱动机制,城镇化因素、政策因素、经济因素、社会发展因素和农业因素是影响奉节县土地利用类型变化的主要驱动力。     

Improvement,identification, and target prediction for miRNAs in the porcine genome by using massive,public high-throughput sequencing data

Despite the broad variety of available microRNA (miRNA) research tools and methods, their application to the identification, annotation, and target prediction of miRNAs in nonmodel organisms is still limited. In this study, we collected nearly all public sRNA-seq data to improve the annotation for known miRNAs and identify novel miRNAs that have not been annotated in pigs (Sus scrofa). We newly annotated 210 mature sequences in known miRNAs and found that 43 of the known miRNA precursors were problematic due to redundant/missing annotations or incorrect sequences. We also predicted 811 novel miRNAs with high confidence, which was twice the current number of known miRNAs for pigs in miRBase. In addition, we proposed a correlation-based strategy to predict target genes for miRNAs by using a large amount of sRNA-seq and RNA-seq data. We found that the correlation-based strategy provided additional evidence of expression compared with traditional target prediction methods. The correlation-based strategy also identified the regulatory pairs that were controlled by nonbinding sites with a particular pattern, which provided abundant complementarity for studying the mechanism of miRNAs that regulate gene expression. In summary, our study improved the annotation of known miRNAs, identified a large number of novel miRNAs, and predicted target genes for all pig miRNAs by using massive public data. This large data-based strategy is also applicable for other nonmodel organisms with incomplete annotation information.     

硒肥与钝化材料组配对土壤Cd钝化及稻米Cd消减效果

为了探讨不同硒肥施用方式联合钝化材料对土壤镉钝化和稻米镉消减的效果,采用盆栽试验的方式,选用亚硒酸钠作为硒肥,钙镁磷肥和硅藻土作为钝化材料,设置基施硒肥+钙镁磷肥+硅藻土和叶面喷施硒肥+钙镁磷肥+硅藻土2种方式,研究其不同用量对镉污染酸性稻田土壤修复与安全利用的影响。结果表明：随着施用量的增加,稻米产量增加,基施硒肥产量略高于叶面喷施硒肥,产量差为 2.115 g/pot,与对照(CK)相比,基施0.28%钙镁磷肥+0.12%硅藻土+0.004‰硒(T3)能够提高1.68倍的稻米产量;随着施用量的增加,pH升高,有效Cd降低,有机质与CEC变化不大;基施硒肥与叶面喷施硒肥处理对土壤pH、有机质与CEC差异不显著,但基施硒肥处理有效Cd含量略低于叶面喷施硒肥处理,T3对土壤Cd的钝化效果最佳;随着基施硒肥用量的增加,稻米Cd含量降低,随着叶面喷施硒肥用量的增加,稻米Cd含量先降低后升高,基施硒肥处理对稻米Cd的消减程度强于叶面喷施硒肥处理,相差 0.021 mg/kg,与对照(CK)相比,T3处理稻米Cd降低0.063 mg/kg。可见,硒对调控稻米镉累积具有重要作用,且基施硒肥强于叶面喷施。综上所述,基施0.28%钙镁磷肥+0.12%硅藻土+0.004‰硒对土壤Cd钝化与稻米Cd消减的效果最佳,值得在镉污染稻田推广应用。     

植保机变量施药鲁棒H∞最优控制

提出了一种基于电控伺服变量柱塞泵的植保机变量施药控制方法,推导并建立了包含参数不确定性和扰动的施药流量模型,设计了鲁棒H∞最优控制器并证明其鲁棒稳定性,并转化为线性矩阵不等式求解控制器参数。本研究弥补了传统优化控制方法对于不确定性反应较为敏感的不足,与传统的线性二次型最优控制相比具有一定的快速性和鲁棒性优势,能够满足复杂作业条件下植保机精准变量施药要求,有效提高了农药利用率。     

气候变化情景下流苏香竹潜在分布区预测

流苏香竹（Chimonocalamus fimbriatus）是云南特有珍稀竹种，主要分布于云南西南部。文章以野外调查获取的流苏香竹分布信息为主，运用最大熵模型（MaxEnt）同时结合地理信息系统（ArcGIS），基于19个气候因子，预测其在当前及未来气候变化情景下的潜在分布区。结果表明：当前流苏香竹的高适生区和中适生区主要分布于德宏州、保山市和临沧市等地，除迪庆州、丽江市和昭通市外，云南其他区域均有低适生区零星分布。在未来2050s和2070s的2个时间段，基于2种不同共享社会经济路径（SSP1-2.6和SSP5-8.5），流苏香竹的高适生区面积呈减少的趋势，尤其是SSP5-8.5路径下，高适生区面积仅为当前的12.51%（2050s）和18.63%（2070s）；中、低适生区在SSP1-2.6路径下，显著扩张（2050s）或略微扩张（2070s），在SSP5-8.5路径下，则大幅收缩。流苏香竹野外实际分布区及其潜在分布区均以斑块状为主，可能与云南特殊的地形、地貌有关。影响流苏香竹分布的主导气候因子为最湿月份降水量、最暖月份最高温度、最干季度降水量和平均气温日较差。流苏香竹对气候变化比较敏感，根据其野外分布状况，建议以就地保护为主、迁地保护为辅，在其潜在适生区内适当引种栽培。     

基于机器视觉的温室番茄裂果检测

该文通过对温室番茄果实进行定位及裂果检测,可为番茄裂果率预估及后续裂果自动筛选提供参考。针对自然光照下采集的各类番茄图像,在相关颜色空间中进行阈值预分割,利用前期支持向量机训练得到的纹理特征分类器对预分割区域进行二次判别;之后在前景区域利用显著性角点分割构造边缘轮廓集,利用基于最小二乘法修正的改进霍夫变换拟合单个番茄目标;最后利用二维Gabor小波算子对拟合的单个番茄区域进行纹理特征提取及裂果判别。文中共采集82幅番茄图像,其中50幅图像作为训练集图像,32幅图像作为验证集,所提算法对测试集中总共128个番茄的果实正确检出率为91.41%,对其中35裂果的正确判别率为97.14%,裂果判别部分平均耗时21 ms。试验结果表明,该方法具有较好的鲁棒性与可靠性,对成熟期番茄裂果率的估计研究及采摘过程中裂果的自动分级筛选具有较好的指导意义,为未来实现温室番茄果实生长状态在线监测提供参考。     

SSCP Marker Development and Analysis of Candidate Restorer Gene Rf1 for Cotton Cytoplasmic Male Sterility

[Objective] Locating the cotton cytoplasmic male sterility (CMS) restorer gene Rf₁ is important for investigating restorer gene mechanisms and improving restorer lines. In our previous study, a gene cluster, with nine Pentatricopeptide repeat(PPR) genes and nine other genes, was found within the 160-kb Rf₁ target region in Scaffold 333. The objective here was to improve the density of Rf1-linked markers in the target region and determine the expression profiles of candidate genes. [Method] Using the sequences of the 18 genes, we designed 155 single-strand conformation polymorphism (SSCP) primers covering all of the gene sequences to identify the polymorphic SSCP markers between the fertile and sterile pools. Additionally, real-time polymerase chain reaction(PCR) was performed to analyze the expression profiles of eight candidate genes in the four developmental stages of buds of sterile, maintainer and restoring lines, respectively. [Result] In total, 15 polymorphic primers were identified. A genotype analysis of the F₂ population was conducted using the 15 primers and 3 other polymorphic simple sequence repeats (SSR) markers. The markers were distributed in a 4.8 cM range. In addition, owing to the influence of sterile cytoplasm or restorer genes, most of the genes showed different expression patterns in the four developmental stages of the three lines' buds. [Conclusion] SSCP markers tightly linked to Rf₁ were identified and the expression profiles of candidate genes were determined. This study provides a basis for the further fine mapping of restorer genes and for candidate gene screening.     

Dynamics of Cotton Rhizosphere Bacterial Community Structure in Cotton Continuous Cropping Field Soil

[Objective] The aim of this study is to understand the dynamics of cotton rhizosphere bacterial community structure in cotton continuous cropping field soil. [Method] 16S rDNA genes were sequenced by high-throughput sequencing technology to determine the community structure of cotton rhizosphere bacteria in different developmental stages using an upland cotton cultivar (Gossypium hirsutum cv. TM-1). [Result] Four dominant phyla were found in the cotton rhizosphere bacterial community including Proteobacteria, Acidobacteria, Planctomycetes, and Bacteroidetes. The four dominant phyla and Firmicutes were largely influenced by cotton root. The relative abundances of Acidobacteria, Planctomycetes, Bacteroidetes were promoted, and Proteobacteria and Firmicutes were inhibited, by cotton root. There were significant differences in community structure, but not species richness or α-diversity among different developmental stages of the cotton rhizosphere bacterial community; the differences between the flowering stage and the budding stage were greater than the differences between the budding stage and the seedling stage. The diversity of the rhizosphere bacterial community in cotton continuous cropping field soil was significantly higher than that of the bulk soil; the β-diversity values of both the rhizosphere and bulk soil bacterial communities were highest in the flowering stage. [Conclusion] The structure and dynamics of the cotton rhizosphere bacterial community in cotton continuous cropping field soil was defined by high-throughput sequencing. The effect of cotton on the rhizosphere bacterial community structure was most significant in the flowering stage.     

Site‐specific management is crucial to managing Mikania micrantha

Increasingly, weeds have been taking on global distributions. With the proliferation of invasive weeds has come the challenge of managing these species over broad geographical regions, with diverse habitats and political jurisdictions. Here, we review the management of Mikania micrantha Kunth (Asteraceae; mile‐a‐minute) throughout its invaded range, extending through most of the Pacific islands and southern and south‐east Asia. Context matters when determining the best course of action for managing M. micrantha, as it has invaded a large variety of agricultural and natural systems. In Queensland, Australia and Florida, USA, M. micrantha has been targeted in relatively successful eradication campaigns, highlighting the importance of early detection and rapid response methods, while elsewhere in its invaded range, populations are either still increasing or showing limited signs of decline. An inter‐regional approach to research and management should incorporate successful management strategies employed throughout the invaded range including, but not limited to, chemical and cultural control practices, manual and mechanical control, classical biological control using the rust fungus Puccinia spegazzinii, plant–plant competition and integrated approaches utilising two or more control methods concurrently. Additional knowledge of M. micrantha genetics is required to determine if management approaches could be fine‐tuned for particular populations. Countries bordering the Mekong River formed a network in 2011 to co‐ordinate the management of invasive species such as M. micrantha. Expanding such a collaborative approach to other regions could further reduce populations of M. micrantha and limit its spread.     

The integration and insertion site of GbVe1 gene in the genome of transgenic cotton (Gossypium hirsutum)

[Objective] The aim of this study was to obtain the flanking sequences of T-DNA in the transgenic cotton containing a GbVe1 over-expression cassette. [Method] The T-DNA insertion copy number in the transgenic GbVe1 cotton was analyzed by southern blot. Flanking sequences of the transgenic lines with putative single T-DNA insertion copy were obtained using high-efficiency Thermal asymmetric interlaced polymerase chain reaction (hiTAIL-PCR). The T-DNA insertion sites were further confirmed by PCR with specific primers. [Result] RB-flanking sequences (119-1 018 bp) and LB-flanking sequences (243-516 bp) were obtained from three transgenic lines with low copy number of T-DNA insertion. The AT content was more than 63% in these flanking sequences. A same single insertion site in the intron of Gohir.D01G157600.1 was found in the two transgenic lines 7/100826-152 and 12/100826-393, while two separated insertion sites, one also in the intron of Gohir.-D01G157600.1 and the other in the intergenic region of A12 chromosome, were found in the transgenic line 1/w-ch14. A deletion of 21 bp was found in the insertion site in the intron of Gohir.D01G157600.1. The T-DNA insertion in the intron of Gohir.D01G157600.1 was further confirmed by the specific PCR. [Conclusion] The flanking sequences of T-DNA in the transgenic GbVe1 cotton were obtained and the specific transformation event in the intron of Gohir.D01G157600.1 was further confirmed by PCR.